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1

The extended kanban control system for production coordination of assembly manufacturing systems

Claudine Chaouiya, George Liberopoulos, Yves Dallery

Journal:

IIE Transactions

Year:

2000

Language:

english

File:

PDF, 210 KB

english, 2000

2

Dynamical modeling of biological regulatory networks

Claudine Chaouiya, Hidde de Jong, Denis Thieffry

Journal:

Year:

2006

Language:

english

File:

PDF, 91 KB

english, 2006

3

Petri net modelling of biological regulatory networks

Claudine Chaouiya, Elisabeth Remy, Denis Thieffry

Journal:

Journal of Discrete Algorithms

Year:

2008

Language:

english

File:

PDF, 288 KB

english, 2008

4

Dynamically consistent reduction of logical regulatory graphs

Aurélien Naldi, Elisabeth Remy, Denis Thieffry, Claudine Chaouiya

Journal:

Theoretical Computer Science

Year:

2011

Language:

english

File:

PDF, 401 KB

english, 2011

5

Mapping multivalued onto Boolean dynamics

Gilles Didier, Elisabeth Remy, Claudine Chaouiya

Journal:

Journal of Theoretical Biology

Year:

2011

Language:

english

File:

PDF, 289 KB

english, 2011

6

Logical modelling and analysis of the budding yeast cell cycle

Adrien Fauré, Claudine Chaouiya, Andrea Ciliberto, Denis Thieffry

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 183 KB

english, 2007

7

Modeling ERBB receptor-regulated G1/S transition to find novel targets forde novotrastuzumab resistance

Özgür Sahin, Holger Fröhlich, Christian Löbke, Ulrike Korf, Sara Burmester, Meher Majety, Jens Mattern, Ingo Schupp, Claudine Chaouiya, Denis Thieffry, Annemarie Poustka, Stefan Wiemann, Tim Beissbart

Journal:

BMC Systems Biology

Year:

2009

Language:

english

File:

PDF, 4.70 MB

english, 2009

8

Logical Modelling of Regulatory Networks, Methods and Applications

Claudine Chaouiya, Elisabeth Remy

Journal:

Bulletin of Mathematical Biology

Year:

2013

Language:

english

File:

PDF, 222 KB

english, 2013

9

SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools

Chaouiya, Claudine, Bérenguier, Duncan, Keating, Sarah M, Naldi, Aurélien, van Iersel, Martijn P, Rodriguez, Nicolas, Dräger, Andreas, Büchel, Finja, Cokelaer, Thomas, Kowal, Bryan, Wicks, Benjamin, G

Journal:

BMC Systems Biology

Year:

2013

Language:

english

File:

PDF, 1.53 MB

english, 2013

10

[IEEE 2008 9th International Workshop on Discrete Event Systems - Goteborg, Sweden (2008.05.28-2008.05.30)] 2008 9th International Workshop on Discrete Event Systems - Qualitative modelling of biological regulatory networks combining a logical multi-valued formalism and Petri nets

Chaouiya, Claudine

Year:

2008

Language:

english

File:

PDF, 883 KB

english, 2008

11

Modular logical modelling of the budding yeast cell cycle

Fauré, Adrien, Naldi, Aurélien, Lopez, Fabrice, Chaouiya, Claudine, Ciliberto, Andrea, Thieffry, Denis

Journal:

Molecular BioSystems

Year:

2009

Language:

english

File:

PDF, 2.41 MB

english, 2009

12

[IEEE Control (MSC) - Yokohama, Japan (2010.09.8-2010.09.10)] 2010 IEEE International Conference on Control Applications - Reduction of logical models of regulatory networks yields insight into dynamical properties

Chaouiya, Claudine, Naldi, Aurelien, Remy, Elisabeth, Thieffry, Denis

Year:

2010

Language:

english

File:

PDF, 396 KB

english, 2010

13

A Discrete Model of Drosophila Eggshell Patterning Reveals Cell-Autonomous and Juxtacrine Effects

Fauré, Adrien, Vreede, Barbara M. I., Sucena, Élio, Chaouiya, Claudine, Shvartsman, Stanislav

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 5.37 MB

english, 2014

14

Diversity and Plasticity of Th Cell Types Predicted from Regulatory Network Modelling

Naldi, Aurélien, Carneiro, Jorge, Chaouiya, Claudine, Thieffry, Denis, Bonneau, Richard

Journal:

PLoS Computational Biology

Year:

2010

Language:

english

File:

PDF, 528 KB

english, 2010

15

Primary sex determination of placental mammals: a modelling study uncovers dynamical developmental constraints in the formation of Sertoli and granulosa cells

Sánchez, Lucas, Chaouiya, Claudine

Journal:

BMC Systems Biology

Year:

2015

Language:

english

File:

PDF, 1.24 MB

english, 2015

16

Modelling the onset of senescence at the G1/S cell cycle checkpoint

Mombach, José CM, Bugs, Cristhian A, Chaouiya, Claudine

Journal:

Year:

2014

Language:

english

File:

PDF, 606 KB

english, 2014

17

Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)

Waltemath, Dagmar, Bergmann, Frank T., Chaouiya, Claudine, Czauderna, Tobias, Gleeson, Padraig, Goble, Carole, Golebiewski, Martin, Hucka, Michael, Juty, Nick, Krebs, Olga, Le Novère, Nicolas, Mi, Hua

Journal:

Standards in Genomic Sciences

Year:

2014

Language:

english

File:

PDF, 669 KB

english, 2014

18

The extended kanban control system for production coordination of assembly manufacturing systems

CHAOUIYA, CLAUDINE, LIBEROPOULOS, GEORGE, DALLERY, YVES

Journal:

IIE Transactions

Year:

2000

Language:

english

File:

PDF, 1.18 MB

english, 2000

19

Logical modelling uncovers developmental constraints for primary sex determination of chicken gonads

Sánchez, Lucas, Chaouiya, Claudine

Journal:

Journal of The Royal Society Interface

Year:

2018

Language:

english

File:

PDF, 534 KB

english, 2018

20

Bringing Dicynodonts Back to Life: Paleobiology and Anatomy of a New Emydopoid Genus from the Upper Permian of Mozambique

Castanhinha, Rui, Araújo, Ricardo, Júnior, Luís C., Angielczyk, Kenneth D., Martins, Gabriel G., Martins, Rui M. S., Chaouiya, Claudine, Beckmann, Felix, Wilde, Fabian, Claessens, Leon

Journal:

Year:

2013

Language:

english

File:

PDF, 18.97 MB

english, 2013

21

Model Checking to Assess T-Helper Cell Plasticity

Abou-JaoudÃ©, Wassim, Monteiro, Pedro T., Naldi, AurÃ©lien, Grandclaudon, Maximilien, Soumelis, Vassili, Chaouiya, Claudine, Thieffry, Denis

Journal:

Frontiers in Bioengineering and Biotechnology

Year:

2015

Language:

english

File:

PDF, 1.32 MB

english, 2015

22

Logical Modeling and Dynamical Analysis of Cellular Networks

Abou-Jaoudé, Wassim, Traynard, Pauline, Monteiro, Pedro T., Saez-Rodriguez, Julio, Helikar, Tomáš, Thieffry, Denis, Chaouiya, Claudine

Journal:

Frontiers in Genetics

Year:

2016

Language:

english

File:

PDF, 3.97 MB

english, 2016

23

Logical Modeling and Analysis of Cellular Regulatory Networks With GINsim 3.0

Naldi, Aurélien, Hernandez, Céline, Abou-Jaoudé, Wassim, Monteiro, Pedro T., Chaouiya, Claudine, Thieffry, Denis

Journal:

Frontiers in Physiology

Year:

2018

Language:

english

File:

PDF, 3.36 MB

english, 2018

24

The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks

Naldi, Aurélien, Hernandez, Céline, Levy, Nicolas, Stoll, Gautier, Monteiro, Pedro T., Chaouiya, Claudine, Helikar, Tomáš, Zinovyev, Andrei, Calzone, Laurence, Cohen-Boulakia, Sarah, Thieffry, Denis,

Journal:

Frontiers in Physiology

Year:

2018

Language:

english

File:

PDF, 1.50 MB

english, 2018

25

SBML Level 3 package: Qualitative Models, Version 1, Release 1

Chaouiya, Claudine, Keating, Sarah M., Berenguier, Duncan, Naldi, Aurélien, Thieffry, Denis, Iersel, Martijn P. van, Le Novère, Nicolas, Helikar, Tomáš

Journal:

Journal of Integrative Bioinformatics

Year:

2015

Language:

english

File:

PDF, 1013 KB

english, 2015

26

Correction to: Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)

Waltemath, Dagmar, Bergmann, Frank T., Chaouiya, Claudine, Czauderna, Tobias, Gleeson, Padraig, Goble, Carole, Golebiewski, Martin, Hucka, Michael, Juty, Nick, Krebs, Olga, Le Novère, Nicolas, Mi, Hua

Journal:

Standards in Genomic Sciences

Year:

2018

Language:

english

File:

PDF, 142 KB

english, 2018

27

Estimating Attractor Reachability in Asynchronous Logical Models

Mendes, Nuno D., Henriques, Rui, Remy, Elisabeth, Carneiro, Jorge, Monteiro, Pedro T., Chaouiya, Claudine

Journal:

Frontiers in Physiology

Year:

2018

Language:

english

File:

PDF, 2.28 MB

english, 2018

28

Petri net–based model of the human DNA base excision repair pathway

Radom, Marcin, Machnicka, Magdalena A., Krwawicz, Joanna, Bujnicki, Janusz M., Formanowicz, Piotr, Chaouiya, Claudine

Journal:

Year:

2019

Language:

english

File:

PDF, 1.60 MB

english, 2019

29

Stable States of Boolean Regulatory Networks Composed Over Hexagonal Grids

Varela, Pedro L., Lynce, Inês, Manquinho, Vasco, Chaouiya, Claudine, Monteiro, Pedro T.

Journal:

Electronic Notes in Theoretical Computer Science

Year:

2018

Language:

english

File:

PDF, 508 KB

english, 2018

30

Petri net–based model of the human DNA base excision repair pathway

Radom, Marcin, Machnicka, Magdalena A., Krwawicz, Joanna, Bujnicki, Janusz M., Formanowicz, Piotr, Chaouiya, Claudine

Journal:

Year:

2019

File:

PDF, 1.60 MB

2019

31

Segmenting the fly embryo: logical analysis of the role of the Segment Polarity cross-regulatory module

Sanchez, Lucas, Chaouiya, Claudine, Thieffry, Denis

Journal:

The International Journal of Developmental Biology

Year:

2008

File:

PDF, 1.52 MB

2008

32

Impact of changing cell-cell communication network in models of epithelial pattern formation

Varela, Pedro L., Monteiro, Pedro T., Chaouiya, Claudine

Journal:

IFAC-PapersOnLine

Year:

2019

File:

PDF, 1.40 MB

2019

33

Hybrid epithelial-mesenchymal phenotypes are controlled by microenvironmental factors

Selvaggio, Gianluca, Canato, Sara, Pawar, Archana, Monteiro, Pedro T, Guerreiro, PatrÃcia S., BrÃ¡s, M. Manuela, Janody, Florence, Chaouiya, Claudine

Journal:

Cancer Research

Year:

2020

File:

PDF, 7.49 MB

2020

34

The Minimum Information about a Molecular Interaction Causal Statement (MI2CAST)

TourÃ©, Vasundra, Vercruysse, Steven, Acencio, Marcio Luis, Lovering, Ruth C, Orchard, Sandra, Bradley, Glyn, Casals-Casas, Cristina, Chaouiya, Claudine, del-Toro, Noemi, Flobak, Ãsmund, Gaudet, Pasc

Journal:

Year:

2020

File:

PDF, 572 KB

2020

35

Assessing regulatory features of the current transcriptional network of Saccharomyces cerevisiae

Monteiro, Pedro T., Pedreira, Tiago, Galocha, Monica, Teixeira, Miguel C., Chaouiya, Claudine

Journal:

Scientific Reports

Year:

2020

File:

PDF, 1.23 MB

2020

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